CViTjs Whole-Genome Visualization

CViTjs provides an interactive whole genome diagram and was developed by the Legume Federation.

Public Charts:

  • L. culinaris 1.2 Gene Distribution: This plot represents the distribution of lentil genes on the Lc1.2 genome. The genes are predicted using the MAKER-P pipeline with EST and RNA sequences as evidence. The color change indicates density of genes in a 200,000 bp region.
  • Exome Target Distribution: Distribution of targeted exonic sequences across the lentil genome. The color change indicates density of exons in a 200,000 bp region.
  • M. truncatula 4.0 Gene Distribution: This plot represents the distribution of fababean genes on the Mt4.0 genome. The color change indicates density of genes in a 60,000 bp region.
  • G. max 1.0 Gene Distribution: This plot represents the distribution of soybean genes on the Gmax 275 v1.0 genome. The color change indicates density of genes in a 90,000 bp region.
  • P. vulgaris Gene Distribution: This plot represents the distribution of common bean genes on the Pvulgaris 218 v1.0 genome. The color change indicates density of genes in a 100,000 bp region.
  • C. arietinum ASM 33114 1.0 Gene Distribution: This plot represents the distribution of chickpea genes on the ASM 33114 V1.0 genome. The color change indicates density of genes in a 80,000 bp region.
  • C. arietinum ICC 4958 2.0 Gene Distribution: This plot represents the distribution of chickpea genes on the ICC 4958 V2.0 genome. The color change indicates density of genes in a 110,000 bp region.
  • Medicago truncatula SNP Distribution: This plot represents the distribution of SNPs from Medicago truncatula Hapmap Project. The color change indicates density of SNPs in a 100,000 bp region.
  • Lentil AGILE 346 Exome Capture SNP Distribution: This plot represents the distribution of SNPs from Lentil AGILE 346 Exome Capture Set. The color change indicates density of SNPs in a 200,000 bp region.
  • Lentil Marker Distribution: This plot represents the distribution of known Lentil markers (genome Lc v1.2) including the following datasets: 454 iMap Markers, Lc1536 Golden Gate Markers and Lentil AGILE 346 Exome Capture. The color change indicates density of markers in a 200,000 bp region.